Subsumption Matching Results for OMIM-ORDO (Disease)
⇕System ⇕Use Training Maps ⇕MRR ⇕Hits@1 ⇕Hits@5 ⇕Hits@10
BERTSubs (IC) 0.433 0.278 0.597 0.833
BERTSubs (IC) 0.3950.2080.6250.778
OWL2Vec* + RF 0.504 0.3330.7140.811
SORBETMtch 0.272 0.181 0.347 0.431
Word2Vec + RF 0.406 0.1670.7640.792
Word2Vec + RF (del) 0.401 0.1940.6810.782

Note: (del) is a trial setting that uses the pruned target ontology similar to OAEI 2022.

Note: OWL2Vec* uses structure, literal and mixture documents, without using pre-trained Word2Vec. RF indicates Random Forest Classifier with n_estimators=50.